TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR426

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UUUUGGAAAUUUGUCCUUACG

miRBase

Precursor miRNA Sequence(5'-3')

GAGGGGGGACAAUUUUUGGAAAUUUGUCCUUACGGGUAGUACUAGAAUACUUGUCCACAUGACGAUUUGAAAUAACCGAAGGACAUAUGAGGAAAAAAUAAAAUUAAACUC

miRBase

Precursor miRNA Structure(5'-3') 

   -GGGGGACA      -GGAA  U       A   G  GUAC    AUAC     C 
GAG         AUUUUU     AU UGUCCUU CGG UA    UAGA    UUGUC A
|||         ||||||     || ||||||| ||| ||    ||||    ||||| C
CUC         UAAAAA     UA ACAGGAA GCC AU    GUUU    AGCAG G
   AAAUUAAAA      AGGAG  U       -   A  -AAA    ----     U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR426      UUUUGGAAAUUUGUCCUUACG
osa-miR426      UUUUGGAAGUUUGUCCUUACG
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