TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR418

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UAAUGUGAUGAUGAAAUGACG

miRBase

Precursor miRNA Sequence(5'-3')

CGUUAGCUGUCUGCAAUCUGCCAUUCUUAUCAUCGCACAUUUAAUGUGAUGAUGAAAUGACGCAUUUCUGUCAAGUCUCACC

miRBase

Precursor miRNA Structure(5'-3') 

C  U  -  GUCU   -AUC   --    C           CA 
 GU AG CU    GCA    UGC  CAUU UUAUCAUCGCA  U
 || || ||    |||    |||  |||| |||||||||||  U
 CA UC GA    UGU    ACG  GUAA AGUAGUAGUGU  A
C  C  U  --AC   CUUU   CA    -           AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR418      UAAUGUGAUGAUGAACUGACC
osa-miR418      UAAUGUGAUGAUGAAAUGACG
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