TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR418

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UAAUGUGAUGAUGAACUGACC

miRBase

Precursor miRNA Sequence(5'-3')

UUUAAAUUUAGAAUCUAGCGUAAAAAGAAAAUCCGAAUCAGGAACUCUAAUGUGAUGAUGAACUGACCUUAGA

miRBase

Precursor miRNA Structure(5'-3') 

     AU    --A   -UA    AAAA   AAA   GA 
UUUAA  UUAG   AUC   GCGU    AGA   UCC  A
|||||  ||||   |||   ||||    |||   |||   
AGAUU  AGUC   UAG   UGUA    UCU   AGG  A
     CC    AAG   UAG    ---A   -CA   AC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR418      UAAUGUGAUGAUGAACUGACC
osa-miR418      UAAUGUGAUGAUGAAAUGACG
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