TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR416

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UGUUCGUCCGUACACUGUUCA

miRBase

Precursor miRNA Sequence(5'-3')

GAUGAGGAGUAUGAAUAGAAAGAAUUAGAAAAGCUACGGUGGUUGUUGAGCAGCGCCAAAAAAAACUCUGCUUUGCUCUGUUUCUGUGUUCGUCCGUACACUGUUCAUC

miRBase

Precursor miRNA Structure(5'-3') 

      G   ------       GAA    U    --     ---------UAC    G      
GAUGAG AGU      AUGAAUA   AGAA UAGA  AAAGC            GGUG UUGUU 
|||||| |||      |||||||   |||| ||||  |||||            |||| |||| G
CUACUU UCA      UGCUUGU   UCUU GUCU  UUUCG            CCGC GACGC 
      G   CAUGCC       --G    U    CG     UCUCAAAAAAAA    -

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR416      GGUUCGUACGUACACUGUUCA
osa-miR416      UGUUCGUCCGUACACUGUUCA
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