TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR416

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

GGUUCGUACGUACACUGUUCA

miRBase

Precursor miRNA Sequence(5'-3')

CGAAACUGAACCCGGUUUGUACGUAUGGACCGCGUCGUUGGAAUCCAAAAGAACCAGGUUCGUACGUACACUGUUCAUCG

miRBase

Precursor miRNA Structure(5'-3') 

   AAC     CC   UU             -GCG  -G      
CGA   UGAAC  GGU  GUACGUAUGGACC    UC  UUGGA 
|||   |||||  |||  |||||||||||||    ||  |||| A
GCU   ACUUG  UCA  CAUGCAUGCUUGG    AG  AACCC 
   ---     --   --             ACCA  AA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR416      GGUUCGUACGUACACUGUUCA
osa-miR416      UGUUCGUCCGUACACUGUUCA
                 ****** *************