TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR414

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

UCAUCCUCAUCAUCAUCGUCC

miRBase

Precursor miRNA Sequence(5'-3')

GUUGCCGCUGCCGUCAUCCUCAUCAUCAUCGUCCUUGCAUGAAACCGCCAGCAAAUCCUUGCGCGGGGGGAGGGGGAAGGGGAGGGGGAGGGGUCGGAGGGGCGGC

miRBase

Precursor miRNA Structure(5'-3') 

      G  G   -  -A     A  A  A  G     G AUGAAA    CA    A 
GUUGCC CU CCG UC  UCCUC UC UC UC UCCUU C      CCGC  GCAA U
|||||| || ||| ||  ||||| || || || ||||| |      ||||  ||||  
CGGCGG GA GGC GG  AGGGG AG GG AG GGGAG G      GGCG  CGUU U
      G  -   U  GG     G  G  A  G     G -----G    --    C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR414      UCAUCCUCAUCAUCAUCGUCC
ppt-miR414      UCAUCCUCAUCAUCCUCGUCC
ath-miR414      UCAUCUUCAUCAUCAUCGUCA
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