TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR414

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

UCAUCUUCAUCAUCAUCGUCA

miRBase

Precursor miRNA Sequence(5'-3')

UCAUCAUUAUCAUCAUCAUCAUAUUCAUCUUCAUCAUCAUCGUCAUCAUCAUCAUCAUCAUCGUAUGAGAAGAUAGAGAAGAGUGAGAGUAUGAGAUUUGAGUUGAGA

miRBase

Precursor miRNA Structure(5'-3') 

UCA   UUA   UC   A        A  -   A  A  -   G  A    - AUCAU 
   UCA   UCA  AUC UCAUAUUC UC UUC UC UC AUC UC UCAU C     C
   |||   |||  ||| |||||||| || ||| || || ||| || |||| |      
   AGU   AGU  UAG AGUAUGAG AG GAG AG AG UAG AG AGUA G     C
-AG   -UG   -U   -        -  U   A  -  A   A  -    U CUACU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR414      UCAUCCUCAUCAUCAUCGUCC
ppt-miR414      UCAUCCUCAUCAUCCUCGUCC
ath-miR414      UCAUCUUCAUCAUCAUCGUCA
                ***** ******** *****