TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR413

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

CUAGUUUCACUUGUUCUGCAC

miRBase

Precursor miRNA Sequence(5'-3')

ACGGCUAGUUUCACUUGUUCUGCACAUGUGGAAAACAGUUAGCACUCUAUCUGAGUCGUAAUCCCAAGCAUUAUUACAGAAAAAUAAAAGUGCAUUACAAAGAAGUCAGACAU

miRBase

Precursor miRNA Structure(5'-3') 

ACGGCUAGUUUCACUUGUUCUGCACAUGUGGAAAACAGUUAGCACUCUA     -G  ---     CCCAA     A   CAG 
                                                 UCUGA  UC   GUAAU     GCAUU UUA   A
                                                 |||||  ||   |||||     ||||| |||    
                                                 AGACU  AG   CAUUA     CGUGA AAU   A
----------------------------------------------UAC     GA  AAA     -----     A   AAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR413      AUAGUUUCUCUUGUUCUGCAC
osa-miR413      CUAGUUUCACUUGUUCUGCAC
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