TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

ath-miR413

Organism

Arabidopsis thaliana

Species

Mature miRNA Sequence(5'-3')

AUAGUUUCUCUUGUUCUGCAC

miRBase

Precursor miRNA Sequence(5'-3')

GAUCCAUAGUUUCUCUUGUUCUGCACAUCCACUAACUUCAGGAACCAUGUCCCAGUUUCAGGUUAGAUCAAGUGGGAAAACAAAUGGAAGAUUGUGGCUAUGCAGAAACUGGAACUAUUCGUC

miRBase

Precursor miRNA Structure(5'-3') 

   CC        UCUUG       CAU    UAA    AGGAACCAUG     G  --  AG 
GAU  AUAGUUUC     UUCUGCA   CCAC   CUUC          UCCCA UU  UC  G
|||  ||||||||     |||||||   ||||   ||||          ||||| ||  ||   
CUG  UAUCAAGG     AAGACGU   GGUG   GAAG          AGGGU AA  AG  A
   CU        --UCA       AUC    UUA    -GUAAACAAA     G  CU  AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

ath-miR413      AUAGUUUCUCUUGUUCUGCAC
osa-miR413      CUAGUUUCACUUGUUCUGCAC
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