TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR1878

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

ACUUAAUCUGGACACUAUAAAAGA

miRBase

Precursor miRNA Sequence(5'-3')

ACCACUGCAGACUUAAUCUGGACACUAUAAAAGAAAAUUGUGCAUGUGAAAAUAUGCCCAUUAUAAAUUUGUAGUGUUCAGAUUGAGUUUAGAAUGGUUG

miRBase

Precursor miRNA Structure(5'-3') 

--    C GC                       AGAAAAU  U      G 
  ACCA U  AGACUUAAUCUGGACACUAUAAA       UG GCAUGU A
  |||| |  |||||||||||||||||||||||       || ||||||  
  UGGU A  UUUGAGUUAGACUUGUGAUGUUU       AC CGUAUA A
GU    A GA                       AAAUAUU  C      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR1878         ACUUAAUCUGGACACUAUAAAAGA
bdi-miR1878-5p      ACUUAGUCUGAACACUAUAAAAAA
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