TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR1878-5p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

ACUUAGUCUGAACACUAUAAAAAA

miRBase

Precursor miRNA Sequence(5'-3')

UCACUAUUGCAAACUUAGUCUGAACACUAUAAAAAAUGCUCAUGUAAAAAUAUGCGCAUCAUAGAUUUGUAGUGUUCAGAUUGAGUUUACAGUAGUUG

miRBase

Precursor miRNA Structure(5'-3') 

UC       C                       ----AA    U     A 
  ACUAUUG AAACUUAGUCUGAACACUAUAAA      AUGC CAUGU A
  ||||||| |||||||||||||||||||||||      |||| |||||  
  UGAUGAC UUUGAGUUAGACUUGUGAUGUUU      UACG GUAUA A
GU       A                       AGAUAC    C     A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR1878         ACUUAAUCUGGACACUAUAAAAGA
bdi-miR1878-5p      ACUUAGUCUGAACACUAUAAAAAA
                    ***** **** *********** *