TarDB

Precursor miRNA Sequence(5'-3')

CAAUAGCAAUGCAUCAGUUACGUUUCCUACAUAGUUACAUGGUAUCAGAGCUGAAAUCCUAAACCAAUGAAUGUUUAUCCAGCACCAAUCCCCUGCUGCUAGGAGCUGUAGCUCUCGGGGCAGUACCUAAUCCGCUGCUGAUCUGUUUCUAGUCAUGAAAAGCACUGUGAUCUGUAAGUGCUUGCUGCAUGCCAUGGUUUUGCCCAAUUCUAUGGCCAUCGUUGGAUUCGUGACCUGACAGUGAUGCAAUAAUCAGUGAUGGAUUUGUGUUGGCUCUACUUGGGGUUGAGGAUCUUAGCUGUUAGCUCUGAUACCAUGUUAACUGUUUAGAGACUUGGCUGAUGCAUUACUUUUGGAAAC

miRBase

Precursor miRNA Structure(5'-3')

-----   U  C             C     C  C       -                 -------A     A    AAUG  U  UUAU       CAAUCCCCUGCUGCUAGGAGCUGUAGCUCUCGGGGCAGUACCUAAUCCGCUGCUGAUCUGUUUCUAGUCAUGAAAAGCACUGUGAUCUG 
     CAA AG AAUGCAUCAGUUA GUUUC UA AUAGUUA CAUGGUAUCAGAGCUGA        AUCCU AACC    AA GU    CCAGCAC                                                                                         U
     ||| || ||||||||||||| ||||| || ||||||| |||||||||||||||||        ||||| ||||    || ||    |||||||                                                                                         A
     GUU UC UUACGUAGUCGGU CAGAG AU UGUCAAU GUACCAUAGUCUCGAUU        UAGGA UUGG    UU CA    GGUUGUG                                                                                         U
CAAAG   U  A             U     -  U       U                 GUCGAUUC     G    --GG  -  UCUC       UUUAGGUAGUGACUAAUAACGUAGUGACAGUCCAGUGCUUAGGUUGCUACCGGUAUCUUAACCCGUUUUGGUACCGUACGUCGUUCGUG

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.