TarDB

Precursor miRNA Sequence(5'-3')

AAAUUCCUUAUAUUGCAGAUAACACCUUAAGGAAGGUUUGUUUUUGUUUUACAGGUUAACUGUGGUGGUAAAUUUUAUCACUUGGCUGAUUCUAUUAUUUUGAGCAAGGCUUCCUAAAGUCAGAUCAUUGGUCUCUCUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCCAGUCAGCAUCUUACCCUUCUCACUACUCAGCAAAUCCACAAAUAGAAACGAGUCGUUGCUUCGGAAGCCUUGUUCAAAAUCAGAGUAUCAGCCAUGUGAUAAAAUUAACAACCAGAGUUAACAUAUAAAACUAAAACAAUCCUUCCUUAAGUUGUUGUUGCUUAAUUUGGGAAUUU

miRBase

Precursor miRNA Structure(5'-3')

        -UAUAUU   G      C           U       U      CAG       G    G  A           U        U  AUU                  UAAAGUCAGAUCAUUGGUCUCUCUCUCAAGUAACUUAGGUUUGAAAAAGCAGCUUCUCC 
AAAUUCCU       GCA AUAACA CUUAAGGAAGG UUGUUUU GUUUUA   GUUAACU UGGU GU AAUUUUAUCAC UGGCUGAU CU   AUUUUGAGCAAGGCUUCC                                                           A
||||||||       ||| |||||| ||||||||||| ||||||| ||||||   ||||||| |||| || ||||||||||| |||||||| ||   ||||||||||||||||||                                                           G
UUUAAGGG       CGU UGUUGU GAAUUCCUUCC AACAAAA CAAAAU   CAAUUGA ACCA CA UUAAAAUAGUG ACCGACUA GA   UAAAACUUGUUCCGAAGG                                                           A
        UUUAAUU   -      U           U       U      AUA       G    A  A           U        U  GAC                  CUUCGUUGCUGAGCAAAGAUAAACACCUAAACGACUCAUCACUCUUCCCAUUCUACGAC

TarDB: A miRNA Target Database in Plants.

TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.

miRNA ID

Organism

Mature miRNA Sequence(5'-3')

Precursor miRNA Sequence(5'-3')

Precursor miRNA Structure(5'-3')

Homologous Mature miRNAs miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.