TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR1850.3

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

CUGUUUAGUUCACAUCAAUCUU

miRBase

Precursor miRNA Sequence(5'-3')

AUGUGAUGGAGAUGCGAUGGAAAGUUGGGAGAUUGGGGGAAGUUGUGUGUGAACUAAACGUGGAUUGGGGCCCUGUUUAGUUCACAUCAAUCUUCCUCCAAAUUCCCAACUUUUCAUCACAUCACAAUCACAU

miRBase

Precursor miRNA Structure(5'-3') 

       GGA    C                A          -   U              U  AUU 
AUGUGAU   GAUG GAUGGAAAGUUGGGAG UUGGGGGAAG UUG GUGUGAACUAAACG GG   G
|||||||   |||| |||||||||||||||| |||||||||| ||| |||||||||||||| ||    
UACACUA   CUAC CUACUUUUCAACCCUU AACCUCCUUC AAC UACACUUGAUUUGU CC   G
       ACA    A                A          U   -              -  CGG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR2275a-5p      AGAAUUGGAUGGAACUAAACA-
csi-miR2275b-5p      AGAAUUGGAUGGAACUAAACA-
osa-miR1850.3        CUGUUUAGUUCACAUCAAUCUU
                         ** * *   *  ** *