TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

csi-miR2275a-5p

Organism

Citrus sinensis

Species

Mature miRNA Sequence(5'-3')

AGAAUUGGAUGGAACUAAACA

miRBase

Precursor miRNA Sequence(5'-3')

CCCUUCAUUUGCAUUUCUAAGUUGUAUGUAAGAAUUGGAUGGAACUAAACAGAUUAGUAAGAUCAAAAUAUUCAGUUGCUGUUUAGUUUCCUCCAAUAUCUUAUCUCCAGCUUCUAAACUAUAUAUAUAAACC

miRBase

Precursor miRNA Structure(5'-3') 

--CCCUUCAUUUGCAUUUCU      UAU      -      U            AUUAGUAAGAUC 
                    AAGUUG   GUAAGA AUUGGA GGAACUAAACAG            A
                    ||||||   |||||| |||||| ||||||||||||             
                    UUCGAC   UAUUCU UAACCU CUUUGAUUUGUC            A
CCAAAUAUAUAUAUCAAAUC      CUC      A      C            GUUGACUUAUAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR2275a-5p      AGAAUUGGAUGGAACUAAACA-
csi-miR2275b-5p      AGAAUUGGAUGGAACUAAACA-
osa-miR1850.3        CUGUUUAGUUCACAUCAAUCUU
                         ** * *   *  ** *