TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR160f-3p

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

GCAUUGAGGGAGUCAUGCAGG

miRBase

Precursor miRNA Sequence(5'-3')

GGAUUAACGCUGCCUGGCUCCCUGAAUGCCAUCCGAGAAGCGUGCCGCUGUGGCCGGCUGCUUCCUGGUUGGCAUUGAGGGAGUCAUGCAGGGUUUGCUC

miRBase

Precursor miRNA Structure(5'-3') 

GGAUU   G    C         G       U   A      U    - U 
     AAC CUGC UGGCUCCCU AAUGCCA CCG GAAGCG GCCG C G
     ||| |||| ||||||||| ||||||| ||| |||||| |||| |  
     UUG GACG ACUGAGGGA UUACGGU GGU CUUCGU CGGC G G
CUCGU   G    U         G       U   C      -    C G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160f-3p      GCAUUGAGGGAGUCAUGCAGG
bdi-miR160e-3p      GCAUUGAGGGAGUCAUGCAGG
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