TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bdi-miR160e-3p

Organism

Brachypodium distachyon

Species

Mature miRNA Sequence(5'-3')

GCAUUGAGGGAGUCAUGCAGG

miRBase

Precursor miRNA Sequence(5'-3')

UAAGGUAAUUAAUGGGUGAUGUUGCCUUCCUGCCUGGCUCCCUGAAUGCCAUCUGAGAAGCACACCACCGUGCCUGGCGUGGCUCCUGGUUGGCAUUGAGGGAGUCAUGCAGGGUUGCAGGUACGUCCUCGCUUACUCCCUUCA

miRBase

Precursor miRNA Structure(5'-3') 

-U    UAAU   -    U     U    ----      C         G       U   A  AG   A   CC 
  AAGG    UAA UGGG GAUGU GCCU    UCCUGC UGGCUCCCU AAUGCCA CUG GA  CAC CCA  G
  ||||    ||| |||| ||||| ||||    |||||| ||||||||| ||||||| ||| ||  ||| |||  U
  UUCC    AUU GCUC CUGCA UGGA    GGGACG ACUGAGGGA UUACGGU GGU CU  GUG GGU  C
AC    -CUC   C    -     -    CGUU      U         G       U   C  CG   C   CC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR160f-3p      GCAUUGAGGGAGUCAUGCAGG
bdi-miR160e-3p      GCAUUGAGGGAGUCAUGCAGG
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