TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

osa-miR1436

Organism

Oryza sativa

Species

Mature miRNA Sequence(5'-3')

ACAUUAUGGGACGGAGGGAGU

miRBase

Precursor miRNA Sequence(5'-3')

AGUUUAUGUGCUACUCCCUCCGUCCCAUAAUAUUAAAACCUAGGACUGGAUAGGACGUUUCAUAGUACAAUGACUCAGAGUCAUUGUACUAUGAAACGUCCUAUCCAGUCCUAGGUUUUAACAUUAUGGGACGGAGGGAGUAGUCUCAACCUAUAUAAACU

miRBase

Precursor miRNA Structure(5'-3') 

         --------                      A                                             
AGUUUAUGU        GCUACUCCCUCCGUCCCAUAAU UUAAAACCUAGGACUGGAUAGGACGUUUCAUAGUACAAUGACUC 
|||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| A
UCAAAUAUA        UGAUGAGGGAGGCAGGGUAUUA AAUUUUGGAUCCUGACCUAUCCUGCAAAGUAUCAUGUUACUGAG 
         UCCAACUC                      C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR1436      ACAUUAUGGGACGGAGGGAGU
osa-miR1436      ACAUUAUGGGACGGAGGGAGU
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