TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR1436

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

ACAUUAUGGGACGGAGGGAGU

miRBase

Precursor miRNA Sequence(5'-3')

GGCUUCCCUGUAUACAGACAGAGUCAUACUCCCUCCAUAAUGUAGUACGGUUUUUGACACUACUACAUUAUGGGACGGAGGGAGUACAUUG

miRBase

Precursor miRNA Structure(5'-3') 

GGCUUCCCUGUAUACAGACAGAGUCA          -----           CG     
                          UACUCCCUCC     AUAAUGUAGUA  GUUU 
                          ||||||||||     |||||||||||  ||| U
                          AUGAGGGAGG     UAUUACAUCAU  CAGA 
---------------------GUUAC          CAGGG           CA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR1436      ACAUUAUGGGACGGAGGGAGU
osa-miR1436      ACAUUAUGGGACGGAGGGAGU
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