TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5559-5p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UACUUGGUGAAUUGUUGGAUC

miRBase

Precursor miRNA Sequence(5'-3')

UAUUUCCUUUUACUUGGUGAAUUGUUGGAUCAUUCUGUAUCAAUCAACCACAUUGAAGCUUCAUGUAUAAGACAAGAUCAACGAUAUUCAAAGAAGAAACACAGAACGAUCUAAUUAUUCACCAAGUAAAAGGAUACG

miRBase

Precursor miRNA Structure(5'-3') 

UAUU                  U        A      AUCAAUCAACCACAUUGAAGCUUCAUGUAU 
    UCCUUUUACUUGGUGAAU GUUGGAUC UUCUGU                              A
    |||||||||||||||||| |||||||| ||||||                               
    AGGAAAAUGAACCACUUA UAAUCUAG AAGACA                              A
GCAU                  U        C      CAAAGAAGAAACUUAUAGCAACUAGAACAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5559-5p      UACUUGGUGAAUUGUUGGAUC
gma-miR5559         UACUUGGUGAAUUGUUGGAUC
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