TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR5559

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UACUUGGUGAAUUGUUGGAUC

miRBase

Precursor miRNA Sequence(5'-3')

UAUUUCCUUUUACUUGGUGAAUUGUUGGAUCACUCUGUGUCAACCAACCAUAUUGGAUUUGGAGCUUCAUGCAGAAGACAAAAGAGAUGCAAGCCAGAGGAAAUAUAGAAUGAUCCAACAUUUCACUAUGUAAAAGGAUUGC

miRBase

Precursor miRNA Structure(5'-3') 

UAUU         U       U          C       CAA  AACCAUA   G    ---GGAG    A 
    UCCUUUUAC UGGUGAA UGUUGGAUCA UCUGUGU   CC       UUG AUUU       CUUC U
    ||||||||| ||||||| |||||||||| |||||||   ||       ||| ||||       |||| G
    AGGAAAAUG AUCACUU ACAACCUAGU AGAUAUA   GG       AAC UAGA       GAAG G
CGUU         U       U          A       -AA  -AGACCG   G    GAAAACA    A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5559-5p      UACUUGGUGAAUUGUUGGAUC
gma-miR5559         UACUUGGUGAAUUGUUGGAUC
                    *********************