TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5290

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

AAUUUGGAGAGAGAUAGACACAUA

miRBase

Precursor miRNA Sequence(5'-3')

AACCGGAAAAAUGGGUCAAGAUCCUCUCCAUUUAUAAAUUUUUUCAUUUGUUGUAAUUUGGAGAGAGAUAGACACAUAAAAUAAGUG

miRBase

Precursor miRNA Structure(5'-3') 

AACCGGAAAAAUGG   AAG   -       -U      AUUUU 
              GUC   AUC CUCUCCA  UUAUAA     U
              |||   ||| |||||||  ||||||     U
              CAG   UAG GAGAGGU  AAUGUU     U
GUGAAUAAAAUACA   --A   A       UU      GUUUA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5290         AAUUUGGAGAGAGA-UAGACACAUA
mtr-miR5561-5p      CAUUUGGAGAGACA-UAGACAA---
fve-miR11286        ---UUGGAGAGAGAGUAGACAAUG-
                       ********* * ******