TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

fve-miR11286

Organism

Fragaria vesca

Species

Mature miRNA Sequence(5'-3')

UUGGAGAGAGAGUAGACAAUG

miRBase

Precursor miRNA Sequence(5'-3')

UCUCCUCUGCUUCUUCCAACCGUGAUGUGUUUCUGAGUUUCAGAAGCCAAGGUCCUUGGAGAGAGAGUAGACAAUG

miRBase

Precursor miRNA Structure(5'-3') 

UCUCC      -   -    ---   G  AUGU          
     UCUGCU UCU UCCA   ACC UG    GUUUCUGAG 
     |||||| ||| ||||   ||| ||    |||||||| U
     AGAUGA AGA AGGU   UGG AC    CGAAGACUC 
GUAAC      G   G    UCC   A  ----

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR5290         AAUUUGGAGAGAGA-UAGACACAUA
mtr-miR5561-5p      CAUUUGGAGAGACA-UAGACAA---
fve-miR11286        ---UUGGAGAGAGAGUAGACAAUG-
                       ********* * ******