TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5264

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UUGAUCAAGGACUUUGCAUC

miRBase

Precursor miRNA Sequence(5'-3')

CUUAUGUGGGUUUGUUGAUCAAGGACUUUGCAUCUUUUUCUUUUGUAUUGUUAUGAAAAUAUAUCAAUGAAUAAGAUGCAAAGUCUUACUUGAUCAACAAACUCACGAA

miRBase

Precursor miRNA Structure(5'-3') 

CUUAU                  ---             U   --UUU      GUU 
     GUGGGUUUGUUGAUCAAG   GACUUUGCAUCUU UUC     UGUAUU   A
     ||||||||||||||||||   ||||||||||||| |||     ||||||    
     CACUCAAACAACUAGUUC   CUGAAACGUAGAA AAG     AUAUAA   A
--AAG                  AUU             U   UAACU      AAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR9755      -UGAUCCAGGAACUUUUCAUCU
mtr-miR5264      UUGAUCAAGGA-CUUUGCAUC-
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