TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR9755

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UGAUCCAGGAACUUUUCAUCU

miRBase

Precursor miRNA Sequence(5'-3')

GGUAAAAAUUGAGGUGAAAAAUUCAUGGAUCAGUUUUCAAUGCAACUUCGCAAAUAAAACUGAUCCAGGAACUUUUCAUCUUCAAUUUUAACC

miRBase

Precursor miRNA Structure(5'-3') 

   A        -        A   A            CAA   AA 
GGU AAAAUUGA GGUGAAAA UUC UGGAUCAGUUUU   UGC  C
||| |||||||| |||||||| ||| ||||||||||||   |||   
CCA UUUUAACU CUACUUUU AAG ACCUAGUCAAAA   ACG  C
   A        U        C   G            UAA   CU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR9755      -UGAUCCAGGAACUUUUCAUCU
mtr-miR5264      UUGAUCAAGGA-CUUUGCAUC-
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