TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR5213-5p

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

UACGUGUGUCUUCACCUCUGAA

miRBase

Precursor miRNA Sequence(5'-3')

UAGUGAAAUUGAUACGUGUGUCUUCACCUCUGAACUAUCAAUAUUAUGUUUCAAAUCUUUGAUUCGAUUCAUUCUUUUGCUUCAGAGUGCAGAUACACGCAUCUCUUUUCCUA

miRBase

Precursor miRNA Structure(5'-3') 

   U    -UU   A         U   C      CUAU   UAUU   UU  A      
UAG GAAA   GAU CGUGUGUCU CAC UCUGAA    CAA    AUG  UC AAUCU 
||| ||||   ||| ||||||||| ||| ||||||    |||    |||  || |||| U
AUC CUUU   CUA GCACAUAGA GUG AGACUU    GUU    UAC  AG UUAGA 
   -    UCU   C         C   -      ---C   UUCU   UU  C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

fve-miR2109         UGCGAGUGUCUUCACCUCUGAA
gma-miR2109-5p      UGCGAGUGUCUUCGCCUCUG--
mtr-miR5213-5p      UACGUGUGUCUUCACCUCUGAA
                    * ** ******** ******