TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR2109-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UGCGAGUGUCUUCGCCUCUG

miRBase

Precursor miRNA Sequence(5'-3')

GGUGCGAGUGUCUUCGCCUCUGAGAGAGAUACUAUGAGAUCUCAAGCCUCGGAGGCGUAGAUACUCACACC

miRBase

Precursor miRNA Structure(5'-3') 

    C        U          ---A     ACU 
GGUG GAGUGUCU CGCCUCUGAG    GAGAU   A
|||| |||||||| ||||||||||    |||||    
CCAC CUCAUAGA GCGGAGGCUC    CUCUA   A
    A        U          CGAA     GAG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

fve-miR2109         UGCGAGUGUCUUCACCUCUGAA
gma-miR2109-5p      UGCGAGUGUCUUCGCCUCUG--
mtr-miR5213-5p      UACGUGUGUCUUCACCUCUGAA
                    * ** ******** ******