TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mtr-miR169f

Organism

Medicago truncatula

Species

Mature miRNA Sequence(5'-3')

AAGCCAAGGAUGACUUGCCUA

miRBase

Precursor miRNA Sequence(5'-3')

UUUAUAAGCCAAGGAUGACUUGCCUAGCUAAAAACCAUUUACAUUAAUUGGGGACUUAAUUUGUAUAUGUUAUGUCUGAUCGAUGAUGAGUAUGUCCCUUGUUUAGUUUAUUAGCAGGCAGGUAUCCUAGGCUUUUUGA

miRBase

Precursor miRNA Structure(5'-3') 

UUUAU     A      A       A     -    CAUUU   UUAAUU      UUAAUUU    A      GUC 
     AAGCC AGGAUG CUUGCCU GCUAA AAAC     ACA      GGGGAC       GUAU UGUUAU   U
     ||||| |||||| ||||||| ||||| ||||     |||      ||||||       |||| ||||||   G
     UUCGG UCCUAU GGACGGA CGAUU UUUG     UGU      UCCCUG       UAUG GUAGUA   C
AGUUU     A      -       -     A    --AUU   ------      -------    A      GCU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR169        AAGCCAAGGAUGAGUUGCCUG-
mtr-miR169f       AAGCCAAGGAUGACUUGCCUA-
ptc-miR169o       AAGCCAAGGAUGACUUGCCUG-
ptc-miR169ag      AAGCCAAGGGUGACUUGCCUGA
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