TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

hvu-miR169

Organism

Hordeum vulgare

Species

Mature miRNA Sequence(5'-3')

AAGCCAAGGAUGAGUUGCCUG

miRBase

Precursor miRNA Sequence(5'-3')

UAACACGCCAGAAAUAAAGCCAAGGAUGAGUUGCCUGAUCAUCAGGACUCAUGGAGGUAGGGCUUUCUGUUUUUGGUGAGUUU

miRBase

Precursor miRNA Structure(5'-3') 

U   A           --     ----AAGG      UG       
 AAC CGCCAGAAAUA  AAGCC        AUGAGU  CCUGAU 
 ||| |||||||||||  |||||        ||||||  ||||| C
 UUG GUGGUUUUUGU  UUCGG        UACUCA  GGACUC 
U   A           CU     GAUGGAGG      --

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

hvu-miR169        AAGCCAAGGAUGAGUUGCCUG-
mtr-miR169f       AAGCCAAGGAUGACUUGCCUA-
ptc-miR169o       AAGCCAAGGAUGACUUGCCUG-
ptc-miR169ag      AAGCCAAGGGUGACUUGCCUGA
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