TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mes-miR1446

Organism

Manihot esculenta

Species

Mature miRNA Sequence(5'-3')

UUCUGAACUCUCUCCCUCAU

miRBase

Precursor miRNA Sequence(5'-3')

UAGAGACUCAGCUUUUUCUGAACUCUCUCCCUCAUAGGCUUCUCAAAACUUGCCUAUCAAACCUCCACAUAAAUUGGCAAGAUUGAGAAGAAGCCUAUGGUGAGAAAGUUCAAAAAAAGUUUGGUUCUCUG

miRBase

Precursor miRNA Structure(5'-3') 

      -  C        C      C    C U        ---      AA      UAUCAAACC 
UAGAGA CU AGCUUUUU UGAACU UCUC C CAUAGGCU   UCUCAA  CUUGCC         U
|||||| || |||||||| |||||| |||| | ||||||||   ||||||  ||||||         C
GUCUCU GG UUGAAAAA ACUUGA AGAG G GUAUCCGA   AGAGUU  GAACGG         C
      U  U        A      A    U -        AGA      -A      UUAAAUACA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1446       UUCUGAACUCUCUCCCUCAAU
ptc-miR1446a      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446b      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446c      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446d      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446e      UUCUGAACUCUCUCCCUCAA-
mes-miR1446       UUCUGAACUCUCUCCCUCAU-
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