TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1446

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUCUGAACUCUCUCCCUCAAU

miRBase

Precursor miRNA Sequence(5'-3')

AUUCAACGUCUUCUGAACUCUCUCCCUCAAUACUCAUUGCUACAGAUAGAAAAUUCAGUUAAGGUCUUUUUUCGUAAGAAGCUCUUGAGGGUUGAGGGUUCGAAAGACGUUUAGUU

miRBase

Precursor miRNA Structure(5'-3') 

-AUUC        C         -U       -UA  CA    UAC   U   AAAUUC 
     AACGUCUU UGAACUCUC  CCCUCAA   CU  UUGC   AGA AGA      A
     |||||||| |||||||||  |||||||   ||  ||||   ||| |||       
     UUGCAGAA GCUUGGGAG  GGGAGUU   GA  AAUG   UUU UCU      U
UUGAU        A         UU       CUC  AG    -CU   U   GGAAUU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1446       UUCUGAACUCUCUCCCUCAAU
ptc-miR1446a      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446b      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446c      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446d      UUCUGAACUCUCUCCCUCAA-
ptc-miR1446e      UUCUGAACUCUCUCCCUCAA-
mes-miR1446       UUCUGAACUCUCUCCCUCAU-
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