TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR5179b

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UUUUGCUCAAGACCGCGCAAC

PmiREN

Precursor miRNA Sequence(5'-3')

ACATGGCATTGGTAAGATGGTTTTGCTCAAGACCGCGCAACACTTCCATATGACGGCGCATCGCTGTGCTCGCCTATCCATCATGGAGGAAGGGAGGAGGCGATAGGGCTGGACGTCGATGCGCTGCTCTATGGCCAGGCTGCGCGGTTCTTGCGCAACATCTCGCACCACCTGTTCCCTCT

PmiREN

Precursor miRNA Structure(5'-3') 

-------   U  CAU    AA  U   U    U     -       A A  -U     U  -          C   G -------      -A   -A  AU 
       ACA GG   UGGU  GA GGU UUGC CAAGA CCGCGCA C CU  CCAUA GA CGGCGCAUCG UGU C       UCGCCU  UCC  UC  G
       ||| ||   ||||  || ||| |||| ||||| ||||||| | ||  ||||| || |||||||||| ||| |       ||||||  |||  ||   
       UGU CC   ACCA  CU CUA AACG GUUCU GGCGCGU G GA  GGUAU CU GUCGCGUAGC GCA G       AGCGGA  AGG  AG  G
UCUCCCU   -  ---    CG  -   C    C     U       C -  CC     -  C          U   G UCGGGAU      GG   GA  GA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mac-miR5179a      UUUUGCUCAAGACCGCGCAAC
mac-miR5179b      UUUUGCUCAAGACCGCGCAAC
sit-miR5179       UUUUGCUCAAGACCGCGCAAC
osa-miR5179       UUUUGCUCAAGACCGCGCAAC
bdi-miR5179       UUUUGCUCAAGACCGCGCAAC
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