TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR5179a

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UUUUGCUCAAGACCGCGCAAC

PmiREN

Precursor miRNA Sequence(5'-3')

ACATGGCGAGGGTAAGATGGTTTTGCTCAAGACCGCGCAACACTTCCATATGACATCGCATCGCTGTGCTCATCTATCCATCAGCAGATACCGATGGAGAAGGCATGGAAAGAGCGGGCGATAGGTTTGGACAGCGATGCGTTGGTTTATGGCCAGGCTGCGCGGTCCTGCGCAAGATCCTCCCATCACTCGATCCATC

PmiREN

Precursor miRNA Structure(5'-3') 

AC    --    -   AA  U        U  A         A A  -U     UGA  U           G UC       - AUCA  AGAUA  G   GA 
  AUGG  CGAG GGU  GA GGUUUUGC CA GACCGCGCA C CU  CCAUA   CA CGCAUCGCUGU C  AUCUAUC C    GC     CC AUG  G
  ||||  |||| |||  || |||||||| || ||||||||| | ||  |||||   || ||||||||||| |  ||||||| |    ||     || |||  A
  UACC  GCUC CUA  CU CUAGAACG GU CUGGCGCGU G GA  GGUAU   GU GCGUAGCGACA G  UGGAUAG G    CG     GG UAC  G
-C    UA    A   CC  C        C  C         C -  CC     UUG  U           G UU       C --GG  AGAAA  -   GG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mac-miR5179a      UUUUGCUCAAGACCGCGCAAC
mac-miR5179b      UUUUGCUCAAGACCGCGCAAC
sit-miR5179       UUUUGCUCAAGACCGCGCAAC
osa-miR5179       UUUUGCUCAAGACCGCGCAAC
bdi-miR5179       UUUUGCUCAAGACCGCGCAAC
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