TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR482b

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UUUCCAAUACCUCCCAUGCCAA

PmiREN

Precursor miRNA Sequence(5'-3')

TCGGGTCTCTCGAAGCTCTTGGTATGGGGCTGGTTTGGAAAACCCTCCCTCCACCTCCATGTTGGTAGGAGTCCGGTGCTTTCCAATACCTCCCATGCCAATGGTTTCCAGGCACCCCTCC

PmiREN

Precursor miRNA Structure(5'-3') 

--UC    C   C      C           CU   -       A -  UCC    -   UCC 
    GGGU UCU GAAGCU UUGGUAUGGGG  GGU UUGGAAA C CC   CUCC ACC   A
    |||| ||| |||||| |||||||||||  ||| ||||||| | ||   |||| |||    
    CCCA GGA CUUUGG AACCGUACCCU  CCA AACCUUU G GG   GAGG UGG   U
CCUC    C   C      U           --   U       C U  CCU    A   UUG

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR2118e        -UUCCCAAUGCCUCCCAUGCCUA
zma-miR2118f        -UUCCCAAUGCCUUCCAUGCCUA
osa-miR2118r        -UUCCCAAUGCCUCCCAUGCCUA
mac-miR482b         -UUUCCAAUACCUCCCAUGCCAA
ptc-miR482b-3p      -UUACCAAUACCUCUCAUGCCAA
stu-miR482c         -UUUCCUAUUCCACCCAUGCCAA
sly-miR482d-3p      -UUUCCUAUUCCACCCAUGCCAA
ppe-miR482e         -UUGCCUAUUCCUCCCAUGCCAA
mac-miR482a         -UUUCCAAUGCCUCCCAUGCCAA
ptc-miR1448         CUUUCCAACGCCUCCCAUAC---
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