TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR482a

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UUUCCAAUGCCUCCCAUGCCAA

PmiREN

Precursor miRNA Sequence(5'-3')

TCGGGTCTCTGGAAGCTCTTGGTATGGGGCTGGGTTGGAAAACCCTACGGCCCCTCCATGTTTGTCTTACATGGAGTGAGGTCTTTTCCAATGCCTCCCATGCCAAGGGTTTCCAGGCACCCCTCC

PmiREN

Precursor miRNA Structure(5'-3') 

--UC    C                      CU G         CCCUAC    - -        UU 
    GGGU UCUGGAAGCUCUUGGUAUGGGG  G GUUGGAAAA      GGCC C CUCCAUGU  G
    |||| ||||||||||||||||||||||  | |||||||||      |||| | ||||||||  U
    CCCA GGACCUUUGGGAACCGUACCCU  C UAACCUUUU      CUGG G GAGGUACA  U
CCUC    C                      -C G         ------    A U        UU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

osa-miR2118e        -UUCCCAAUGCCUCCCAUGCCUA
zma-miR2118f        -UUCCCAAUGCCUUCCAUGCCUA
osa-miR2118r        -UUCCCAAUGCCUCCCAUGCCUA
mac-miR482b         -UUUCCAAUACCUCCCAUGCCAA
ptc-miR482b-3p      -UUACCAAUACCUCUCAUGCCAA
stu-miR482c         -UUUCCUAUUCCACCCAUGCCAA
sly-miR482d-3p      -UUUCCUAUUCCACCCAUGCCAA
ppe-miR482e         -UUGCCUAUUCCUCCCAUGCCAA
mac-miR482a         -UUUCCAAUGCCUCCCAUGCCAA
ptc-miR1448         CUUUCCAACGCCUCCCAUAC---
                     ** ** *  **   *** *