TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR2118

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UUGCCGAUUCCUCCCAUCCCUA

PmiREN

Precursor miRNA Sequence(5'-3')

CTGGCTCCCCGAAAGCCGTGGGGATGGGGGCATCTGCAAGTCCATGCCTGCTCTTCCTGCTTCGGATGCTGTCTGTTGGCGGGAAGATGCAGGCGCTGGTTCTTGCCGATTCCTCCCATCCCTATGGTTTCTGGCAGCTCCTTC

PmiREN

Precursor miRNA Structure(5'-3') 

---CU    C  C    G             -  C   U     -U   -       -          -U       
     GGCU CC GAAA CCGUGGGGAUGGG GG AUC GCAAG  CCA UGCCUGC UCUUCCUGCU  CGGAUG 
     |||| || |||| ||||||||||||| || ||| |||||  ||| ||||||| ||||||||||  ||||| C
     UCGA GG CUUU GGUAUCCCUACCC CC UAG CGUUC  GGU GCGGACG AGAAGGGCGG  GUCUGU 
CUUCC    C  U    -             U  U   C     UU   C       U          UU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2118a-3p      UUGCCGAUUCCACCCAUUCCU-
gma-miR2118b-3p      UUGCCGAUUCCACCCAUUCCU-
pvu-miR2118          UUGCCGAUUCCACCCAUUCCUA
mac-miR2118          UUGCCGAUUCCUCCCAUCCCUA
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