TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR2118b-3p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUGCCGAUUCCACCCAUUCCU

miRBase

Precursor miRNA Sequence(5'-3')

UGAGGAAGUGAUGGGAGAUGGGAGGGUCGGUAAAGGAUAACAGCGUCUCUAUGAUUAAUUGUUGUGUUGUUUAUUCUUUUGCCGAUUCCACCCAUUCCUAUGAUUUUCUU

miRBase

Precursor miRNA Structure(5'-3') 

U        G       A    A   -           --U       U UC  UGA 
 GAGGAAGU AUGGGAG UGGG GGG UCGGUAAAGGA   AACAGCG C  UA   U
 |||||||| ||||||| |||| ||| |||||||||||   ||||||| |  ||    
 UUCUUUUA UAUCCUU ACCC CCU AGCCGUUUUCU   UUGUUGU G  GU   A
-        G       -    A   U           UAU       - UU  UAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR2118a-3p      UUGCCGAUUCCACCCAUUCCU-
gma-miR2118b-3p      UUGCCGAUUCCACCCAUUCCU-
pvu-miR2118          UUGCCGAUUCCACCCAUUCCUA
mac-miR2118          UUGCCGAUUCCUCCCAUCCCUA
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