TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

mac-miR167a

Organism

Musa acuminata

Species

Mature miRNA Sequence(5'-3')

UGAAGCUGCCAGCAUGAUCUGA

PmiREN

Precursor miRNA Sequence(5'-3')

CTTTGTGCACCACAAGTGGCTGAAGCTGCCAGCATGATCTGATCATCTCCCAGATCTGTCTAAACGAATCAGATCATGTGGCCGCTTCATCTGCTGCGGGGAGCACAAGAA

PmiREN

Precursor miRNA Structure(5'-3') 

-C       -A  ACA     C      U    G           CA  UCCC   U 
  UUUGUGC  CC   AGUGG UGAAGC GCCA CAUGAUCUGAU  UC    AGA C
  |||||||  ||   ||||| |||||| |||| |||||||||||  ||    |||  
  GAACACG  GG   UCGUC ACUUCG CGGU GUACUAGACUA  AG    UCU U
AA       AG  GCG     U      C    -           --  CAAA   G

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mpo-miR-b3.0r1-8350      --CGGAUCAUG-UGG-AGACUCACC---
stu-miR167a-3p           ----GAUCAUG-UGGCAGCCUCACC---
csi-miR167d-3p           AUCGGAUCAUG-UGGUAGCUUCACC---
stu-miR167d-3p           ----GAUCAUG-UGGUUGCUUCACC---
mtr-miR167b-3p           ----GAUCAUG-UUGGAGCUUCACC---
ath-miR167c-3p           --UAGGUCAUGCUGGUAGUUUCACC---
stu-miR167b-3p           ----GAUCAUG-UGGCAGCAUCACC---
bol-miR167c              ------UGAAGCUGCCAGCAUGAUCUAU
mac-miR167a              ------UGAAGCUGCCAGCAUGAUCUGA
                               * * * *    *  * * *