TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

bol-miR167c

Organism

Brassica oleracea

Species

Mature miRNA Sequence(5'-3')

UGAAGCUGCCAGCAUGAUCUAU

PmiREN

Precursor miRNA Sequence(5'-3')

CAAATCCACAAGGGAATAAGTGAAGCTGCCAGCATGATCTATCTTTGGTTAAGAAATGAATGTGGAAACATGTTGTTTAAACCCAGGCTAGGTCATGTCTGACAGCTTCACTCCTTCCTGGTCTAGGACTAT

PmiREN

Precursor miRNA Structure(5'-3') 

CAAA   ---  AA     UA          C   -         U   U    AAG    G      G 
    UCC   AC  GGGAA  AGUGAAGCUG CAG CAUGAUCUA CUU GGUU   AAAU AAUGUG A
    |||   ||  |||||  |||||||||| ||| ||||||||| ||| ||||   |||| ||||||  
    AGG   UG  UCCUU  UCACUUCGAC GUC GUACUGGAU GGA CCAA   UUUG UUGUAC C
UAUC   AUC  -G     CC          A   U         C   C    --A    -      A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mpo-miR-b3.0r1-8350      --CGGAUCAUG-UGG-AGACUCACC---
stu-miR167a-3p           ----GAUCAUG-UGGCAGCCUCACC---
csi-miR167d-3p           AUCGGAUCAUG-UGGUAGCUUCACC---
stu-miR167d-3p           ----GAUCAUG-UGGUUGCUUCACC---
mtr-miR167b-3p           ----GAUCAUG-UUGGAGCUUCACC---
ath-miR167c-3p           --UAGGUCAUGCUGGUAGUUUCACC---
stu-miR167b-3p           ----GAUCAUG-UGGCAGCAUCACC---
bol-miR167c              ------UGAAGCUGCCAGCAUGAUCUAU
mac-miR167a              ------UGAAGCUGCCAGCAUGAUCUGA
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