TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR4414b

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AGCUGCUGACUCGUUGGUUCG

miRBase

Precursor miRNA Sequence(5'-3')

AGGCGGUGGAAGAUGGCUGAAACUCAGCUGCUGACUCGUUGGUUCGAGAGCUCACCAUUAAGAUCGAUCGAUGAUGUCGGCACUCAGCCCAUGUACAUAAUUAAGGUGGUCUGCUUCUGAUCCAACGAUGCGGGAGCUGCAUUUAGUCGUGACUGUCACGUCUUG

miRBase

Precursor miRNA Structure(5'-3') 

--     G   A  --         ACU     G   AC       U   A    UC      AA   CGAUCG   -    C   A 
  AGGCG UGG AG  AUGGCUGAA   CAGCU CUG  UCGUUGG UCG GAGC  ACCAUU  GAU      AUG AUGU GGC C
  ||||| ||| ||  |||||||||   ||||| |||  ||||||| ||| ||||  ||||||  |||      ||| |||| ||| U
  UCUGC ACU UC  UGCUGAUUU   GUCGA GGC  AGCAACC AGU UUCG  UGGUGG  UUA      UAC UGUA CCG G
GU     -   G  AG         -AC     G   GU       U   C    UC      AA   -----A   A    C   A

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR4414a-5p      AGCUGCUGACUCGUUGGUUCA
csi-miR156j-5p       AGCUGCUGACUCGUUGGUUCA
gma-miR4414b         AGCUGCUGACUCGUUGGUUCG
gma-miR4414a-5p      AGCUGCUGACUCGUUGGCUC-
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