TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR4414a-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AGCUGCUGACUCGUUGGCUC

miRBase

Precursor miRNA Sequence(5'-3')

ACUGAAACUCAGCUGCUGACUCGUUGGCUCGAGAGUUCACCAUUAAGAUAGAUUGAUGUUCGGCACUCACGCCAUGUAAUUAAGGUGGUGUGCUUCUGAUCCAACGAUGCGGGAGCUGCAUUCAGUCG

miRBase

Precursor miRNA Structure(5'-3') 

--      ACU     G   AC       C   A    U       AAGAUAGA     -GUUC   AC 
  ACUGAA   CAGCU CUG  UCGUUGG UCG GAGU CACCAUU        UUGAU     GGC  U
  ||||||   ||||| |||  ||||||| ||| |||| |||||||        |||||     |||   
  UGACUU   GUCGA GGC  AGCAACC AGU UUCG GUGGUGG        AAUUA     CCG  C
GC      -AC     G   GU       U   C    U       --------     AUGUA   CA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR4414a-5p      AGCUGCUGACUCGUUGGUUCA
csi-miR156j-5p       AGCUGCUGACUCGUUGGUUCA
gma-miR4414b         AGCUGCUGACUCGUUGGUUCG
gma-miR4414a-5p      AGCUGCUGACUCGUUGGCUC-
                     ***************** **