TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR4365

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AAGAACUUCUUCCGCGAGAUCGCA

miRBase

Precursor miRNA Sequence(5'-3')

AAGAACUUCUUCCGCGAGAUCGCAUGGAAGAAGGUUCUUCCACAGUUGUAACAUUAACUGCGGAAGAACCUUCUUCCAUGCCAUCUCGUGGAAGAA

miRBase

Precursor miRNA Structure(5'-3') 

AAGAACU             C                    A      UA 
       UCUUCCGCGAGAU GCAUGGAAGAAGGUUCUUCC CAGUUG  A
       ||||||||||||| |||||||||||||||||||| ||||||   
       AGAAGGUGCUCUA CGUACCUUCUUCCAAGAAGG GUCAAU  U
------A             C                    C      UA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR4365      AAGAACUUCUUCCGCGAGAU-CGCA
ath-miR8180      -----UGCGGUGCGGGAGAAGUGC-
                           * ** ****   **