TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR2111a

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

GUCCUUGGGAUGCAGAUUACG

miRBase

Precursor miRNA Sequence(5'-3')

AUUGCUGGGUCCGGAUUAGGUAAUCUGCAUCCUGAGGUUUAGGACAAUAUCCUUUGUUUUGUUUCUAGUCCUUGGGAUGCAGAUUACGUCUUCCUUGCCAGCACUGUA

miRBase

Precursor miRNA Structure(5'-3') 

---AU      GUCC   UU G                  U      -   UAUC 
     UGCUGG    GGA  A GUAAUCUGCAUCCUGAGG UUAGGA CAA    C
     ||||||    |||  | |||||||||||||||||| |||||| |||    U
     ACGACC    CCU  U CAUUAGACGUAGGGUUCC GAUCUU GUU    G
AUGUC      -GUU   UC G                  U      U   UUGU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR2111m-3p      GUCCUCGGGAUACAGAUUACU
cru-miR2111          -UCCUCGGGAUACAGAUUACC
gma-miR2111a         GUCCUUGGGAUGCAGAUUACG
gma-miR2111d         GUCCUUGGGAUGCAGAUUACG
vvi-miR2111-3p       GUCCUCUGGUUGCAGAUUACU
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