TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

cru-miR2111

Organism

Capsella rubella

Species

Mature miRNA Sequence(5'-3')

UCCUCGGGAUACAGAUUACC

PmiREN

Precursor miRNA Sequence(5'-3')

GGTACTTGGTGATGAATGGGTAATCTGCATCCTGAGGTTTAAAACTTTATAAGCATACATATATATGCAAATGTAAAGTTTTTAATCCTCGGGATACAGATTACCTCTTCCTTACTCGAGGTACA

PmiREN

Precursor miRNA Structure(5'-3') 

G      --     U   U          C         -UUU           --A     CA 
 GUACUU  GGUGA GAA GGGUAAUCUG AUCCUGAGG    AAAACUUUAUA   GCAUA  U
 ||||||  ||||| ||| |||||||||| |||||||||    |||||||||||   |||||   
 CAUGGA  UCAUU CUU UCCAUUAGAC UAGGGCUCC    UUUUGAAAUGU   CGUAU  A
A      GC     C   C          A         UAAU           AAA     AU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

mtr-miR2111m-3p      GUCCUCGGGAUACAGAUUACU
cru-miR2111          -UCCUCGGGAUACAGAUUACC
gma-miR2111a         GUCCUUGGGAUGCAGAUUACG
gma-miR2111d         GUCCUUGGGAUGCAGAUUACG
vvi-miR2111-3p       GUCCUCUGGUUGCAGAUUACU
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