TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR2108a

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUAAUGUGUUGUGUUUGUCGG

miRBase

Precursor miRNA Sequence(5'-3')

CUGUGUUUUAAUGUGUUGUGUUUGUCGGAACCCCUGAUUACAUUUUUGUUAAGCGCAG

miRBase

Precursor miRNA Structure(5'-3') 

        U    UGUU    UU     A 
CUGUGUUU AAUG    GUGU  GUCGG A
|||||||| ||||    ||||  ||||| C
GACGCGAA UUGU    UACA  UAGUC C
        -    -UUU    -U     C

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

vvi-miR3637-5p      -AUUUAUGUAUUGUGUUUUGUCGGA
gma-miR2108a        --UUAAUGUGUUGUGUUU-GUCGG-
vvi-miR3637-3p      UUUCGACAAGACACAAUGCAUAAA-
                      *  *          *   *