TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR171t

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUGAGCCGCGUCAAUAUCUCA

miRBase

Precursor miRNA Sequence(5'-3')

GAAGUGCUGUAUGAAGCACAAAUCAAGGUAUUGGCGCGCCUCAAUUUGAAGUCAUGGUUAACAUGAAACAAGCCAUGUAGUUUUAAUUGAGCCGCGUCAAUAUCUCAUCUUGCACUU

miRBase

Precursor miRNA Structure(5'-3') 

GAAGUGCUGUAUGAAGCACAAAUCA             C       U   G -       AACA 
                         AGGUAUUGGCGCG CUCAAUU GAA U CAUGGUU    U
                         ||||||||||||| ||||||| ||| | |||||||    G
                         UCUAUAACUGCGC GAGUUAA UUU A GUACCGA    A
-------------UUCACGUUCUAC             C       U   G U       ACAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR171e-3p      UUGAGCCGCGUCAAUAUCUCC
csi-miR171g-3p      UUGAGCCGCGUCAAUAUCUCC
fve-miR171h         UUGAGCCGCGUCAAUAUCUCC
mdm-miR171p         UUGAGCCGCGUCAAUAUCUCC
mdm-miR171b         UUGAGCCGCGUCAAUAUCUCC
mdm-miR171a         UUGAGCCGCGUCAAUAUCUCC
ppe-miR171h         UUGAGCCGCGUCAAUAUCUCC
mes-miR171a         UUGAGCCGCGUCAAUAUCUCC
gma-miR171t         UUGAGCCGCGUCAAUAUCUCA
gma-miR171n         UUGAGCCGCGUCAAUAUCUUA
gma-miR171p         UUGAGCCGCGUCAAUAUCUUA
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