TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR171n

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UUGAGCCGCGUCAAUAUCUUA

miRBase

Precursor miRNA Sequence(5'-3')

AUACGAAUUAGCACAUGACAAAUUAAGGUAUUGGCGUGCCUCAAUUUGAAUACAUGGCUAUUAUGACAAAUCCAGCCUUGUAGUUUGAUUGAGCCGCGUCAAUAUCUUAUUUUGCUCUUCUUUUCCAUCUCCUA

miRBase

Precursor miRNA Structure(5'-3') 

-AUACGAAUUAGCACAU  -    U               C       UGAA    U    AUUAUG 
                 GA CAAA UAAGGUAUUGGCGUG CUCAAUU    UACA GGCU      A
                 || |||| ||||||||||||||| |||||||    |||| ||||       
                 CU GUUU AUUCUAUAACUGCGC GAGUUAG    AUGU CCGA      A
AUCCUCUACCUUUUCUU  C    U               C       UUUG    U    CCUAAA

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

csi-miR171e-3p      UUGAGCCGCGUCAAUAUCUCC
csi-miR171g-3p      UUGAGCCGCGUCAAUAUCUCC
fve-miR171h         UUGAGCCGCGUCAAUAUCUCC
mdm-miR171p         UUGAGCCGCGUCAAUAUCUCC
mdm-miR171b         UUGAGCCGCGUCAAUAUCUCC
mdm-miR171a         UUGAGCCGCGUCAAUAUCUCC
ppe-miR171h         UUGAGCCGCGUCAAUAUCUCC
mes-miR171a         UUGAGCCGCGUCAAUAUCUCC
gma-miR171t         UUGAGCCGCGUCAAUAUCUCA
gma-miR171n         UUGAGCCGCGUCAAUAUCUUA
gma-miR171p         UUGAGCCGCGUCAAUAUCUUA
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