TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR171b-5p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

ACGGCGUGAUAUUGGUACGGCUC

miRBase

Precursor miRNA Sequence(5'-3')

UAGACACGGCGUGAUAUUGGUACGGCUCAUCUUAAUUCAACCAUUAUAUCAACAAUUGAGACGAGCCGAAUCAAUAUCACUCUUGUUUGCUU

miRBase

Precursor miRNA Structure(5'-3') 

---      C  C           A      A        CAACCAU 
   UAGACA GG GUGAUAUUGGU CGGCUC UCUUAAUU       U
   |||||| || ||||||||||| |||||| ||||||||        
   GUUUGU UC CACUAUAACUA GCCGAG AGAGUUAA       A
UUC      -  U           A      C        CAACUAU

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR171a         -UGAGCCGUGCCAAUAUCACGA---
mes-miR171d         AUGAGCCGUGCCAAUAUCACG----
gma-miR171b-5p      --ACGGCGUGAUAUUGGUACGGCUC
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