TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR171a

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

UGAGCCGUGCCAAUAUCACGA

miRBase

Precursor miRNA Sequence(5'-3')

GUUCAACGGGAUAUUGGUCCGGUUCAAUAAGAAAGCAAUGCUCAAAAUGUUUUUGGGUCCUGUUUUUUCAUUGAGCCGUGCCAAUAUCACGAACCACUGCUC

miRBase

Precursor miRNA Structure(5'-3') 

--------    AACGG         C         A        AU          
        GUUC     GAUAUUGGU CGGUUCAAU AGAAAGCA  GCUCAAAAU 
        ||||     ||||||||| ||||||||| ||||||||  |||||||| G
        CAAG     CUAUAACCG GCCGAGUUA UUUUUUGU  UGGGUUUUU 
CUCGUCAC    ---CA         U         C        CC

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR171a         -UGAGCCGUGCCAAUAUCACGA---
mes-miR171d         AUGAGCCGUGCCAAUAUCACG----
gma-miR171b-5p      --ACGGCGUGAUAUUGGUACGGCUC
                        * ****  * *   ***