TarDB: A miRNA Target Database in Plants.


TarDB employs cross-species conservation filter, degradome and sRNA-seq data to identify high-confidence miRNA targets in plants.



miRNA ID

gma-miR1520p

Organism

Glycine max

Species

Mature miRNA Sequence(5'-3')

AUGUUGUUAUUGGAUGAUGACGGU

miRBase

Precursor miRNA Sequence(5'-3')

ACAUGUCAUGUUGUUAUUGGAUGAUGACGGUAACAUUUUAUAGUAUGAUUGAAUGUCAACUUCAUGAAAGAUAAUUUUUUUCAUUGACCAAUCAAAACAUAACAUGUGACAGUCAUCAUCCAAUAACAACGUGACAUGU

miRBase

Precursor miRNA Structure(5'-3') 

                            G  A    U    A  -A      AAU    ACUUC        U 
ACAUGUCAUGUUGUUAUUGGAUGAUGAC GU ACAU UUAU GU  UGAUUG   GUCA     AUGAAAGA A
|||||||||||||||||||||||||||| || |||| |||| ||  ||||||   ||||     |||||||| A
UGUACAGUGCAACAAUAACCUACUACUG CA UGUA AAUA CA  ACUAAC   CAGU     UACUUUUU U
                            A  G    C    -  AA      ---    -----        U

Homologous Mature miRNAs   miRNAs are clustered by CD-HIT with sequence identity of >85% and word size of 5.

gma-miR1520p      AUGUUGUUAUUGGAUGAUGACGGU
sbi-miR5565e      ---UUGU--UUGGAUGUUGUCGGA
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